Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01898.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 266

Length: 444
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:317 original size:33 final size:33

Alignment explanation


    Indices: 258--320  Score: 83
    Period size: 33  Copynumber: 1.9  Consensus size: 33

        248 ATTGCCTTGC

                                 *           
        258 TTTGCAAGTATATGTGTATATGTTTATTATGAG
          1 TTTGCAAGTATATGTGTATATATTTATTATGAG

                       *        *          
        291 TTTGCAAGTATGT-TCGTATGTATTTATTAT
          1 TTTGCAAGTATATGT-GTATATATTTATTAT

        321 CACTCATATG


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  32    1  0.04
  33   25  0.96

ACGTcount: A:0.25, C:0.05, G:0.19, T:0.51


Consensus pattern (33 bp):   
TTTGCAAGTATATGTGTATATATTTATTATGAG
Done.