Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01349.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1000
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26


Found at i:152 original size:10 final size:10

Alignment explanation


    Indices: 111--143  Score: 57
    Period size: 10  Copynumber: 3.3  Consensus size: 10

        101 AGCCTCTCCC

                      
        111 CCATCCAAAT
          1 CCATCCAAAT

                  *   
        121 CCATCCGAAT
          1 CCATCCAAAT

                      
        131 CCATCCAAAT
          1 CCATCCAAAT

               
        141 CCA
          1 CCA

        144 AATCCATCCC


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  10   21  1.00

ACGTcount: A:0.36, C:0.42, G:0.03, T:0.18


Consensus pattern (10 bp):   
CCATCCAAAT
Done.