Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01351.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2163
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38


Found at i:172 original size:69 final size:69

Alignment explanation


    Indices: 59--218  Score: 214
    Period size: 69  Copynumber: 2.3  Consensus size: 69

         49 TCAACTTTAC

                             *                                               
         59 CCTTCTCCCTCTTTTTCGTTCTCACGTCTGAAGCAACTTCTTTTTTTTCA-TTCTTCCCATTTCC
          1 CCTTCT-CCTCTTTTTCATTCTCACGTCTGAAGCAAC-TCTTTTTTTTCATTTCTTCCCATTTCC

                  
        123 TTCCAA
         64 TTCCAA

                               *           *  *  *                           
        129 CCTTCTCCTCTTTTTCATTGTCACGTCTGAATCATCTTTTTTTTTTCATTCTTCTTCCCATTTCC
          1 CCTTCTCCTCTTTTTCATTCTCACGTCTGAAGCAACTCTTTTTTTTCA-T-TTCTTCCCATTTCC

                  
        194 TTCCAA
         64 TTCCAA

              *                
        200 CCATCTCTCTCTTTTTCAT
          1 CCTTCTC-CTCTTTTTCAT

        219 GCTTATATCC


Statistics
Matches: 80,  Mismatches: 6, Indels: 6
        0.87            0.07        0.07

Matches are distributed among these distances:
  68   11  0.14
  69   26  0.32
  70    6  0.08
  71   26  0.32
  72   11  0.14

ACGTcount: A:0.12, C:0.33, G:0.04, T:0.50


Consensus pattern (69 bp):   
CCTTCTCCTCTTTTTCATTCTCACGTCTGAAGCAACTCTTTTTTTTCATTTCTTCCCATTTCCTT
CCAA
Done.