Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01369.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 923

Length: 1539
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29


Found at i:1249 original size:21 final size:21

Alignment explanation


    Indices: 1225--1266  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1215 ATACCATCTG

                                 
       1225 ATTGCGTTCTGCATAACCAAT
          1 ATTGCGTTCTGCATAACCAAT

                                 
       1246 ATTGCGTTCTGCATAACCAAT
          1 ATTGCGTTCTGCATAACCAAT

       1267 TACATCCTCA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33


Consensus pattern (21 bp):   
ATTGCGTTCTGCATAACCAAT
Done.