Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01388.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3698
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38


Found at i:2937 original size:16 final size:15

Alignment explanation


    Indices: 2902--2938  Score: 56
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       2892 TGTTAATTTG

                        * *
       2902 ATTTTTGGATGTTCT
          1 ATTTTTGGATGTACC

                           
       2917 ATTTTTGGATGTACC
          1 ATTTTTGGATGTACC

                   
       2932 ATTTTTG
          1 ATTTTTG

       2939 TTCATCTGAG


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.16, C:0.08, G:0.19, T:0.57


Consensus pattern (15 bp):   
ATTTTTGGATGTACC
Done.