Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01402.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3046
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:2423 original size:29 final size:29

Alignment explanation


    Indices: 2381--2436  Score: 112
    Period size: 29  Copynumber: 1.9  Consensus size: 29

       2371 ACTGCAAGCC

                                         
       2381 GTCGTAACGGATTAAAATAGTTTCATGCA
          1 GTCGTAACGGATTAAAATAGTTTCATGCA

                                       
       2410 GTCGTAACGGATTAAAATAGTTTCATG
          1 GTCGTAACGGATTAAAATAGTTTCATG

       2437 TTCTTTTGCA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   27  1.00

ACGTcount: A:0.34, C:0.12, G:0.21, T:0.32


Consensus pattern (29 bp):   
GTCGTAACGGATTAAAATAGTTTCATGCA
Done.