Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01419.F10

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3402
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29


Found at i:392 original size:33 final size:33

Alignment explanation


    Indices: 337--403  Score: 107
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        327 AAAAAAACTG

                *            *               
        337 AGACTTTACTTTCAAGGTAATTTTCGAGAGAGA
          1 AGACGTTACTTTCAAGGCAATTTTCGAGAGAGA

                    *                        
        370 AGACGTTATTTTCAAGGCAATTTTCGAGAGAGA
          1 AGACGTTACTTTCAAGGCAATTTTCGAGAGAGA

             
        403 A
          1 A

        404 CTTTCAAATT


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  33   31  1.00

ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31


Consensus pattern (33 bp):   
AGACGTTACTTTCAAGGCAATTTTCGAGAGAGA
Done.