Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01423.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3249
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:843 original size:238 final size:238

Alignment explanation


    Indices: 372--844  Score: 727
    Period size: 237  Copynumber: 2.0  Consensus size: 238

        362 CTACAATAGT

                *                   *             *           *              
        372 GCAGGTTCTTTTGTATTCTTTAGGGTTCCTTTTGTAGGTATAAATGACATGTTGTTCATTATTAC
          1 GCAGATTCTTTTGTATTCTTTAGGATTCCTTTTGTAGGCATAAATGACATATTGTTCATTATTAC

                                                  *                          
        437 ATGTACTTCTCTAGCAAATACAATATCCTGGGTATTTATCAAAATATTTAGCTCTGGTGTAACAT
         66 ATGTACTTCTCTAGCAAATACAATATCCTGGGTATTTAGCAAAATATTTAGCTCTGGTGTAACAT

              *                             *                    *           
        502 GGGCCTAATTACCGTGCTGTGAACAATTATTGTTTGTTTGTTTTTTTAACCATTATGTGTATAAC
        131 GGACCTAATTACCGTGCTGTGAACAATTATTGGTTGTTTGTTTTTTTAACCATCATGTGTATAAC

                              *                        
        567 TTCCTTAAGATAGGCAAGTTTGATATTTATTATTTGTATTAGA
        196 TTCCTTAAGATAGGCAAGATTGATATTTATTATTTGTATTAGA

                                                                             
        610 GCAGATTCTTTTGTATTCTTTAGGATTCCTTTTGTAGGCATAAATGACATATTGTTCATTATTAC
          1 GCAGATTCTTTTGTATTCTTTAGGATTCCTTTTGTAGGCATAAATGACATATTGTTCATTATTAC

                                  *                                          
        675 ATGTACTTCTCTAGCAAATAC-GTATCCTGGGTATTTAGCAAAATATTTAGCTCTGGTGTAACAT
         66 ATGTACTTCTCTAGCAAATACAATATCCTGGGTATTTAGCAAAATATTTAGCTCTGGTGTAACAT

                        *        *                            *              
        739 GGACCTAATTACTGTGCTGTGCACAATTATTGGTTGTTT-TTATTTTT-AGCATCATGTGTATAG
        131 GGACCTAATTACCGTGCTGTGAACAATTATTGGTTGTTTGTT-TTTTTAACCATCATGTGTATA-

            *       *    *   *        *       *        
        802 CCTTCCTTGAGATGGGCTAGATTGATTTTTATTTTTTTGTATT
        194 ACTTCCTTAAGATAGGCAAGATTGATATTTA-TTATTTGTATT

        845 TTTAACAATT


Statistics
Matches: 213,  Mismatches: 19, Indels: 6
        0.89            0.08        0.03

Matches are distributed among these distances:
 236   15  0.07
 237  106  0.50
 238   92  0.43

ACGTcount: A:0.25, C:0.14, G:0.18, T:0.44


Consensus pattern (238 bp):   
GCAGATTCTTTTGTATTCTTTAGGATTCCTTTTGTAGGCATAAATGACATATTGTTCATTATTAC
ATGTACTTCTCTAGCAAATACAATATCCTGGGTATTTAGCAAAATATTTAGCTCTGGTGTAACAT
GGACCTAATTACCGTGCTGTGAACAATTATTGGTTGTTTGTTTTTTTAACCATCATGTGTATAAC
TTCCTTAAGATAGGCAAGATTGATATTTATTATTTGTATTAGA
Done.