Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01440.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2027
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30


Found at i:1325 original size:6 final size:6

Alignment explanation


    Indices: 1314--1344  Score: 53
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       1304 TCTTGTAATG

                                               
       1314 CATCTT CATCTT CATCTT CATCTT CACTCTT
          1 CATCTT CATCTT CATCTT CATCTT CA-TCTT

       1345 TGTTGCCTTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6   20  0.83
   7    4  0.17

ACGTcount: A:0.16, C:0.35, G:0.00, T:0.48


Consensus pattern (6 bp):   
CATCTT

Done.