Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01449.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1327
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27


Found at i:290 original size:18 final size:18

Alignment explanation


    Indices: 267--304  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        257 AGATCAGCAG

                              
        267 TGGTTTAACACCAGTCGA
          1 TGGTTTAACACCAGTCGA

                              
        285 TGGTTTAACACCAGTCGA
          1 TGGTTTAACACCAGTCGA

              
        303 TG
          1 TG

        305 TTCCAGCAGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29


Consensus pattern (18 bp):   
TGGTTTAACACCAGTCGA
Done.