Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01476.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 571

Length: 952
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:435 original size:27 final size:27

Alignment explanation


    Indices: 404--459  Score: 103
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        394 TTTATAGCCT

                                       
        404 GATTTTACAGAGAAATAATGAAAAATA
          1 GATTTTACAGAGAAATAATGAAAAATA

                        *              
        431 GATTTTACAGAGGAATAATGAAAAATA
          1 GATTTTACAGAGAAATAATGAAAAATA

              
        458 GA
          1 GA

        460 AAAAAATTAC


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.54, C:0.04, G:0.18, T:0.25


Consensus pattern (27 bp):   
GATTTTACAGAGAAATAATGAAAAATA

Found at i:867 original size:19 final size:19

Alignment explanation


    Indices: 843--880  Score: 60
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        833 GGGTTGTTTA

                                
        843 TTGTTTTTGT-TTTTATTTT
          1 TTGTTTTT-TATTTTATTTT

                               
        862 TTGTTTTTTATTTTATTTT
          1 TTGTTTTTTATTTTATTTT

        881 GTATGGTCCC


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  18    1  0.06
  19   17  0.94

ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84


Consensus pattern (19 bp):   
TTGTTTTTTATTTTATTTT
Done.