Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00227.F17

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4293
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:2160 original size:75 final size:75

Alignment explanation


    Indices: 2034--2186  Score: 261
    Period size: 75  Copynumber: 2.0  Consensus size: 75

       2024 TAGCCTCATG

                                          *               *                  
       2034 TTGCTGTACTATTGAAGTTTAAATGCTGTAGTCTGATTCTTTTTGTTGCTGGCTATGTTATATCA
          1 TTGCTGTACTATTGAAGTTTAAATGCTGTAATCTGATTCTTTTTGTCGCTGGCTATGTTATATCA

                      
       2099 GGACAATCCT
         66 GGACAATCCT

                    *                       *                              * 
       2109 TTGCTGTATTATTGAAGTTTAAATGCTGTAATTTGATTCTTTTTGTCGCTGGCTATGTTATATTA
          1 TTGCTGTACTATTGAAGTTTAAATGCTGTAATCTGATTCTTTTTGTCGCTGGCTATGTTATATCA

                      
       2174 GGACAATCCT
         66 GGACAATCCT

               
       2184 TTG
          1 TTG

       2187 GAGAACGAAG


Statistics
Matches: 73,  Mismatches: 5, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  75   73  1.00

ACGTcount: A:0.22, C:0.13, G:0.20, T:0.46


Consensus pattern (75 bp):   
TTGCTGTACTATTGAAGTTTAAATGCTGTAATCTGATTCTTTTTGTCGCTGGCTATGTTATATCA
GGACAATCCT
Done.