Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01495.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1301
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:763 original size:17 final size:17

Alignment explanation


    Indices: 741--774  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        731 ATAGCATAAA

                             
        741 TGACAGAAGGATTTAGC
          1 TGACAGAAGGATTTAGC

                             
        758 TGACAGAAGGATTTAGC
          1 TGACAGAAGGATTTAGC

        775 GGAGCTGATC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24


Consensus pattern (17 bp):   
TGACAGAAGGATTTAGC
Done.