Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01502.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 487

Length: 812
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34


Found at i:124 original size:38 final size:38

Alignment explanation


    Indices: 71--148  Score: 138
    Period size: 38  Copynumber: 2.1  Consensus size: 38

         61 GAGTCGTTCT

                                  *               
         71 ATGTCTTTCAATCTGAAAATCTTAGGCGCTTCTTCTCC
          1 ATGTCTTTCAATCTGAAAATCTAAGGCGCTTCTTCTCC

                      *                           
        109 ATGTCTTTCAGTCTGAAAATCTAAGGCGCTTCTTCTCC
          1 ATGTCTTTCAATCTGAAAATCTAAGGCGCTTCTTCTCC

              
        147 AT
          1 AT

        149 TGCACACCGG


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  38   38  1.00

ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38


Consensus pattern (38 bp):   
ATGTCTTTCAATCTGAAAATCTAAGGCGCTTCTTCTCC
Done.