Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01508.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3097
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27


Found at i:1229 original size:21 final size:21

Alignment explanation


    Indices: 1204--1244  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1194 AAATGGCGAG

                          *      
       1204 GGAGATAGAGACGATGAGGAT
          1 GGAGATAGAGACGAAGAGGAT

                  *    *        
       1225 GGAGATGGAGATGAAGAGGA
          1 GGAGATAGAGACGAAGAGGA

       1245 CCGAGGTGAT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.39, C:0.02, G:0.46, T:0.12


Consensus pattern (21 bp):   
GGAGATAGAGACGAAGAGGAT

Found at i:2526 original size:16 final size:16

Alignment explanation


    Indices: 2505--2536  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       2495 AAGAAGCACA

                            
       2505 ACAGATAAATTTATCT
          1 ACAGATAAATTTATCT

                            
       2521 ACAGATAAATTTATCT
          1 ACAGATAAATTTATCT

       2537 TCTTTGACAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38


Consensus pattern (16 bp):   
ACAGATAAATTTATCT
Done.