Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01512.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 874

Length: 1457
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31


Found at i:53 original size:3 final size:3

Alignment explanation


    Indices: 45--79  Score: 61
    Period size: 3  Copynumber: 11.7  Consensus size: 3

         35 CCTCCTTATT

                                                    *     
         45 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC ATC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT

         80 TAGAAAATCC


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66


Consensus pattern (3 bp):   
TTC

Done.