Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01534.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5514
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32


Found at i:4382 original size:108 final size:108

Alignment explanation


    Indices: 4187--4404  Score: 305
    Period size: 108  Copynumber: 2.0  Consensus size: 108

       4177 TGCCGAAATG

                                                    *  *                     
       4187 AGAAAGGTGCATATTGGCCAATTATTTCTAACCTTCCTCGTGTGAGGATAAATTATGTTGACATC
          1 AGAAAGGTGCATATTGGCCAATTATTTCTAACCTTCCTC-AGTAAGGATAAATTATGTTGACATC

                   *                    *         *     
       4252 CGCTGAACAAGAACAAGCAGATTGCATTTCTAGATGGATAGCAA
         65 CGCTGAAAAAGAACAAGCAGATTGCATTCCTAGATGGACAGCAA

                               *         *                                   
       4296 AGAAAGGTGCATATTGGCCTATTATTTCTCACCTTCACT-AGTAAGGAT-AATTCATGTTGACAT
          1 AGAAAGGTGCATATTGGCCAATTATTTCTAACCTTC-CTCAGTAAGGATAAATT-ATGTTGACAT

             **         *                                
       4359 CTTCTGAAAAAGCACAAGCAGATTGCATTCCTAGATGGACAGCAA
         64 CCGCTGAAAAAGAACAAGCAGATTGCATTCCTAGATGGACAGCAA

             
       4404 A
          1 A

       4405 AACTAATTGC


Statistics
Matches: 97,  Mismatches: 10, Indels: 5
        0.87            0.09        0.04

Matches are distributed among these distances:
 107    4  0.04
 108   57  0.59
 109   34  0.35
 110    2  0.02

ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28


Consensus pattern (108 bp):   
AGAAAGGTGCATATTGGCCAATTATTTCTAACCTTCCTCAGTAAGGATAAATTATGTTGACATCC
GCTGAAAAAGAACAAGCAGATTGCATTCCTAGATGGACAGCAA
Done.