Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01550.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5436
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28


Found at i:1724 original size:84 final size:84

Alignment explanation


    Indices: 1587--1752  Score: 260
    Period size: 84  Copynumber: 2.0  Consensus size: 84

       1577 GGTTAATGAA

                                               **   *                        
       1587 GAGGGGGTGAATAAAAGAGAAGGTGATGTGAAGGATGATGGTGAGTTGCAAGATTGTGGACAGAA
          1 GAGGGGGTGAATAAAAGAGAAGGTGATGTGAAGGACAATGATGAGTTGCAAGATTGTGGACAGAA

                               
       1652 TCTAAATGGTGGAACTAAT
         66 TCTAAATGGTGGAACTAAT

                *        *           *                                       
       1671 GAGGTGGTGAATAGAAGAGAAGGTGGTGTGAAGGACAATGATGAGTTGCAAGATTGTGGACAGAA
          1 GAGGGGGTGAATAAAAGAGAAGGTGATGTGAAGGACAATGATGAGTTGCAAGATTGTGGACAGAA

             *   *           
       1736 TTTAAGTGGTGGAACTA
         66 TCTAAATGGTGGAACTA

       1753 GTGGTACTGG


Statistics
Matches: 74,  Mismatches: 8, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  84   74  1.00

ACGTcount: A:0.35, C:0.05, G:0.37, T:0.23


Consensus pattern (84 bp):   
GAGGGGGTGAATAAAAGAGAAGGTGATGTGAAGGACAATGATGAGTTGCAAGATTGTGGACAGAA
TCTAAATGGTGGAACTAAT
Done.