Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01550.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2799
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28


Found at i:143 original size:84 final size:84

Alignment explanation


    Indices: 2--162  Score: 259
    Period size: 84  Copynumber: 1.9  Consensus size: 84

          1 G

                                          **   *                             
          2 GGTGAATAAAAGAGAAGGTGATGTGAAGGATGATGGTGAGTTGCAAGATTGTGGACAGAATCTAA
          1 GGTGAATAAAAGAGAAGGTGATGTGAAGGACAATGATGAGTTGCAAGATTGTGGACAGAATCTAA

                               
         67 ATGGTGGAACTAATGAGGT
         66 ATGGTGGAACTAATGAGGT

                    *           *                                        *   
         86 GGTGAATAGAAGAGAAGGTGGTGTGAAGGACAATGATGAGTTGCAAGATTGTGGACAGAATTTAA
          1 GGTGAATAAAAGAGAAGGTGATGTGAAGGACAATGATGAGTTGCAAGATTGTGGACAGAATCTAA

            *           
        151 GTGGTGGAACTA
         66 ATGGTGGAACTA

        163 GTGGTACTGG


Statistics
Matches: 70,  Mismatches: 7, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  84   70  1.00

ACGTcount: A:0.35, C:0.05, G:0.36, T:0.24


Consensus pattern (84 bp):   
GGTGAATAAAAGAGAAGGTGATGTGAAGGACAATGATGAGTTGCAAGATTGTGGACAGAATCTAA
ATGGTGGAACTAATGAGGT
Done.