Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01556.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 280

Length: 467
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26


Found at i:369 original size:21 final size:21

Alignment explanation


    Indices: 335--374  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        325 CAACTGAGGC

                          *      
        335 AGTGCCACTGCACTTTGCTCG
          1 AGTGCCACTGCACTATGCTCG

                                
        356 AGTGCCA-TGACACTATGCT
          1 AGTGCCACTG-CACTATGCT

        375 TGTTATGGGC


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    2  0.12
  21   15  0.88

ACGTcount: A:0.20, C:0.30, G:0.23, T:0.28


Consensus pattern (21 bp):   
AGTGCCACTGCACTATGCTCG
Done.