Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01557.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2856
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28


Found at i:2488 original size:75 final size:75

Alignment explanation


    Indices: 2360--2508  Score: 244
    Period size: 75  Copynumber: 2.0  Consensus size: 75

       2350 CAAGTCGCCT

                             *                *                     *        
       2360 CTTGAAGCCCTTTTGTCTGACATGCAAGTAACAGGTACTGCTGCTTCCTGCTCTAAGAAAAGTGA
          1 CTTGAAGCCCTTTTGTCAGACATGCAAGTAACAGATACTGCTGCTTCCTGCTCTAAAAAAAGTGA

                *     
       2425 TGATGGTTCC
         66 TGATAGTTCC

                *                        *                                   
       2435 CTTGGAGCCCTTTTGTCAGACATGCAAGTCACAGATACTGCTGCTTCCTGCTCTAAAAAAAGTGA
          1 CTTGAAGCCCTTTTGTCAGACATGCAAGTAACAGATACTGCTGCTTCCTGCTCTAAAAAAAGTGA

                     
       2500 TGATAGTTC
         66 TGATAGTTC

       2509 TCAACCTGGT


Statistics
Matches: 68,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  75   68  1.00

ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30


Consensus pattern (75 bp):   
CTTGAAGCCCTTTTGTCAGACATGCAAGTAACAGATACTGCTGCTTCCTGCTCTAAAAAAAGTGA
TGATAGTTCC
Done.