Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01562.F11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3334
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35


Found at i:2803 original size:6 final size:6

Alignment explanation


    Indices: 2792--2821  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       2782 ACAAAAAACG

                                              
       2792 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA
          1 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA

       2822 ATTTGACAGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (6 bp):   
GAAGGA

Done.