Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01566.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1285
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27


Found at i:404 original size:3 final size:3

Alignment explanation


    Indices: 396--429  Score: 50
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        386 GGTGATCAAA

                                     **                  
        396 ATG ATG ATG ATG ATG ATG ACA ATG ATG ATG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A

        430 AGGACAAGGG


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.38, C:0.03, G:0.29, T:0.29


Consensus pattern (3 bp):   
ATG

Done.