Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01577.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1145
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33


Found at i:96 original size:6 final size:6

Alignment explanation


    Indices: 82--112  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

         72 TTCTCAGTCT

                                                 
         82 CCAAT- CCAATC CCAATC CCAATC CCAATC CC
          1 CCAATC CCAATC CCAATC CCAATC CCAATC CC

        113 CTCCTAATTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    5  0.20
   6   20  0.80

ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16


Consensus pattern (6 bp):   
CCAATC

Done.