Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01579.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1018
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36


Found at i:399 original size:13 final size:13

Alignment explanation


    Indices: 381--411  Score: 62
    Period size: 13  Copynumber: 2.4  Consensus size: 13

        371 CTTATTAATT

                         
        381 GTTGTGTGGTTGG
          1 GTTGTGTGGTTGG

                         
        394 GTTGTGTGGTTGG
          1 GTTGTGTGGTTGG

                 
        407 GTTGT
          1 GTTGT

        412 TGATTGATTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48


Consensus pattern (13 bp):   
GTTGTGTGGTTGG
Done.