Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01580.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4606
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33


Found at i:3987 original size:13 final size:13

Alignment explanation


    Indices: 3969--3999  Score: 62
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       3959 CTTATTAATT

                         
       3969 GTTGTGTGGTTGG
          1 GTTGTGTGGTTGG

                         
       3982 GTTGTGTGGTTGG
          1 GTTGTGTGGTTGG

                 
       3995 GTTGT
          1 GTTGT

       4000 TGATTGATTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48


Consensus pattern (13 bp):   
GTTGTGTGGTTGG
Done.