Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01592.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3556
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34


Found at i:3482 original size:6 final size:6

Alignment explanation


    Indices: 3466--3497  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

       3456 CGTTTCTCCT

                   *                             
       3466 CCTGCC GCTGCC CCTGCC CCTGCC CCTGCC CC
          1 CCTGCC CCTGCC CCTGCC CCTGCC CCTGCC CC

       3498 ATGTTTAAGT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.00, C:0.66, G:0.19, T:0.16


Consensus pattern (6 bp):   
CCTGCC

Done.