Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01594.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2929
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29


Found at i:651 original size:2 final size:2

Alignment explanation


    Indices: 639--679  Score: 66
    Period size: 2  Copynumber: 21.0  Consensus size: 2

        629 CAAAAAGGAT

                                                                  *       
        639 AG AG A- AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG GG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

        680 CACTCTGCAT


Statistics
Matches: 36,  Mismatches: 2, Indels: 2
        0.90            0.05        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   35  0.97

ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00


Consensus pattern (2 bp):   
AG

Done.