Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01596.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1766
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32


Found at i:1631 original size:11 final size:11

Alignment explanation


    Indices: 1617--1641  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       1607 TAGATTTAAT

                       
       1617 ATTCATCATTA
          1 ATTCATCATTA

                       
       1628 ATTCATCATTA
          1 ATTCATCATTA

               
       1639 ATT
          1 ATT

       1642 GAAATTTAGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48


Consensus pattern (11 bp):   
ATTCATCATTA
Done.