Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01608.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3386
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35


Found at i:714 original size:54 final size:54

Alignment explanation


    Indices: 648--757  Score: 211
    Period size: 54  Copynumber: 2.0  Consensus size: 54

        638 CGTGGAAGTG

                                                                  
        648 ATAGTGAAGTAAGTGACATTTCATAGATCTGTCCTCCAGGTTCTTTTGTTTTGA
          1 ATAGTGAAGTAAGTGACATTTCATAGATCTGTCCTCCAGGTTCTTTTGTTTTGA

                   *                                              
        702 ATAGTGAGGTAAGTGACATTTCATAGATCTGTCCTCCAGGTTCTTTTGTTTTGA
          1 ATAGTGAAGTAAGTGACATTTCATAGATCTGTCCTCCAGGTTCTTTTGTTTTGA

              
        756 AT
          1 AT

        758 CTGCGATCTG


Statistics
Matches: 55,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  54   55  1.00

ACGTcount: A:0.24, C:0.15, G:0.21, T:0.41


Consensus pattern (54 bp):   
ATAGTGAAGTAAGTGACATTTCATAGATCTGTCCTCCAGGTTCTTTTGTTTTGA

Found at i:2692 original size:14 final size:14

Alignment explanation


    Indices: 2673--2701  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       2663 ATTAGTTCAT

                          
       2673 AGAGGTTTGTATGA
          1 AGAGGTTTGTATGA

                          
       2687 AGAGGTTTGTATGA
          1 AGAGGTTTGTATGA

             
       2701 A
          1 A

       2702 CTCTATTGGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34


Consensus pattern (14 bp):   
AGAGGTTTGTATGA
Done.