Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01608.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2809
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34


Found at i:340 original size:54 final size:54

Alignment explanation


    Indices: 274--383  Score: 211
    Period size: 54  Copynumber: 2.0  Consensus size: 54

        264 CGTGGAAGTG

                                                                  
        274 ATAGTGAAGTAAGTGACATTTCATAGATCTGTCCTCCAGGTTCTTTTGTTTTGA
          1 ATAGTGAAGTAAGTGACATTTCATAGATCTGTCCTCCAGGTTCTTTTGTTTTGA

                   *                                              
        328 ATAGTGAGGTAAGTGACATTTCATAGATCTGTCCTCCAGGTTCTTTTGTTTTGA
          1 ATAGTGAAGTAAGTGACATTTCATAGATCTGTCCTCCAGGTTCTTTTGTTTTGA

              
        382 AT
          1 AT

        384 CTGCGATCTG


Statistics
Matches: 55,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  54   55  1.00

ACGTcount: A:0.24, C:0.15, G:0.21, T:0.41


Consensus pattern (54 bp):   
ATAGTGAAGTAAGTGACATTTCATAGATCTGTCCTCCAGGTTCTTTTGTTTTGA
Done.