Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01924.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1017
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28


Found at i:170 original size:8 final size:8

Alignment explanation


    Indices: 157--182  Score: 52
    Period size: 8  Copynumber: 3.2  Consensus size: 8

        147 AAAAGAGCTA

                    
        157 AAAAAAAG
          1 AAAAAAAG

                    
        165 AAAAAAAG
          1 AAAAAAAG

                    
        173 AAAAAAAG
          1 AAAAAAAG

              
        181 AA
          1 AA

        183 TAACGTTTGC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00


Consensus pattern (8 bp):   
AAAAAAAG
Done.