Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga08g01616.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3432
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Found at i:1555 original size:394 final size:394
Alignment explanation
Indices: 827--1615 Score: 1560
Period size: 394 Copynumber: 2.0 Consensus size: 394
817 GTCAAGGCCT
827 TCTCTAATGATCTTGCTAGTTTGTTCCAAGATTTTTCCGACTCTTAGGTTGTGAGATTCAATGAG
1 TCTCTAATGATCTTGCTAGTTTGTTCCAAGATTTTTCCGACTCTTAGGTTGTGAGATTCAATGAG
892 TGGGATTGCTTCAGCGTCAAGTTCTGACTTACATAGATTTTAATATTTTTCCATTAAACAGATTC
66 TGGGATTGCTTCAGCGTCAAGTTCTGACTTACATAGATTTTAATATTTTTCCATTAAACAGATTC
957 TGTGATACACTATATGTAAATTTACAGAAATAGTTTAACCACATCCTTTTTGTTTCTTCCACTTT
131 TGTGATACACTATATGTAAATTTACAGAAATAGTTTAACCACATCCTTTTTGTTTCTTCCACTTT
*
1022 CATTATATTTCCAGCATAGGTATTGATTTTCTATGAAGTCTAAATCTTGGACCCTTGAGAAGCCT
196 CATTATATTTCCAGCATAGGTATTGATTTCCTATGAAGTCTAAATCTTGGACCCTTGAGAAGCCT
*
1087 TGGTGGAGAACTTATGTGACACTAAACCAGTTTCGTTTTGCTGTTAAGATAGTATAGTTTACTGA
261 TGGTGGAGAACTTATGTGAAACTAAACCAGTTTCGTTTTGCTGTTAAGATAGTATAGTTTACTGA
1152 TCATGTGGAATCCTACTCTTTACCTGTTATGTAAAGCTACATAACTATGGAGCGCAGAAGAAAAT
326 TCATGTGGAATCCTACTCTTTACCTGTTATGTAAAGCTACATAACTATGGAGCGCAGAAGAAAAT
1217 GCAA
391 GCAA
1221 TCTCTAATGATCTTGCTAGTTTGTTCCAAGATTTTTCCGACTCTTAGGTTGTGAGATTCAATGAG
1 TCTCTAATGATCTTGCTAGTTTGTTCCAAGATTTTTCCGACTCTTAGGTTGTGAGATTCAATGAG
1286 TGGGATTGCTTCAGCGTCAAGTTCTGACTTACATAGATTTTAATATTTTTCCATTAAACAGATTC
66 TGGGATTGCTTCAGCGTCAAGTTCTGACTTACATAGATTTTAATATTTTTCCATTAAACAGATTC
1351 TGTGATACACTATATGTAAATTTACAGAAATAGTTTAACCACATCCTTTTTGTTTCTTCCACTTT
131 TGTGATACACTATATGTAAATTTACAGAAATAGTTTAACCACATCCTTTTTGTTTCTTCCACTTT
1416 CATTATATTTCCAGCATAGGTATTGATTTCCTATGAAGTCTAAATCTTGGACCCTTGAGAAGCCT
196 CATTATATTTCCAGCATAGGTATTGATTTCCTATGAAGTCTAAATCTTGGACCCTTGAGAAGCCT
1481 TGGTGGAGAACTTATGTGAAACTAAACCAGTTTCGTTTTGCTGTTAAGATAGTATAGTTTACTGA
261 TGGTGGAGAACTTATGTGAAACTAAACCAGTTTCGTTTTGCTGTTAAGATAGTATAGTTTACTGA
1546 TCATGTGGAATCCTACTCTTTACCTGTTATGTAAAGCTACATAACTATGGAGCGCAGAAGAAAAT
326 TCATGTGGAATCCTACTCTTTACCTGTTATGTAAAGCTACATAACTATGGAGCGCAGAAGAAAAT
1611 GCAA
391 GCAA
1615 T
1 T
1616 GATTGATAAT
Statistics
Matches: 393, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
394 393 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (394 bp):
TCTCTAATGATCTTGCTAGTTTGTTCCAAGATTTTTCCGACTCTTAGGTTGTGAGATTCAATGAG
TGGGATTGCTTCAGCGTCAAGTTCTGACTTACATAGATTTTAATATTTTTCCATTAAACAGATTC
TGTGATACACTATATGTAAATTTACAGAAATAGTTTAACCACATCCTTTTTGTTTCTTCCACTTT
CATTATATTTCCAGCATAGGTATTGATTTCCTATGAAGTCTAAATCTTGGACCCTTGAGAAGCCT
TGGTGGAGAACTTATGTGAAACTAAACCAGTTTCGTTTTGCTGTTAAGATAGTATAGTTTACTGA
TCATGTGGAATCCTACTCTTTACCTGTTATGTAAAGCTACATAACTATGGAGCGCAGAAGAAAAT
GCAA
Done.