Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01625.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4544
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30


Found at i:1683 original size:2 final size:2

Alignment explanation


    Indices: 1676--1704  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

       1666 AAGAAAGCAA

                                                       
       1676 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

       1705 ATGAAGACTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00


Consensus pattern (2 bp):   
AG

Done.