Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01632.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1932
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.37


Found at i:314 original size:1 final size:1

Alignment explanation


    Indices: 308--337  Score: 60
    Period size: 1  Copynumber: 30.0  Consensus size: 1

        298 TTATCTTTGC

                                          
        308 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

        338 GCCCTGTGGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   29  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:503 original size:16 final size:16

Alignment explanation


    Indices: 482--512  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        472 TATTTCTAGG

                            
        482 TTACTATCGATTGTTT
          1 TTACTATCGATTGTTT

                           
        498 TTACTATCGATTGTT
          1 TTACTATCGATTGTT

        513 CTTTGAAGCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.19, C:0.13, G:0.13, T:0.55


Consensus pattern (16 bp):   
TTACTATCGATTGTTT
Done.