Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01640.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3923
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36


Found at i:3301 original size:44 final size:44

Alignment explanation


    Indices: 3238--3326  Score: 178
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       3228 ACTATCGCTT

                                                        
       3238 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
          1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA

                                                        
       3282 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
          1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA

             
       3326 T
          1 T

       3327 GATGCTATAG


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   45  1.00

ACGTcount: A:0.27, C:0.13, G:0.13, T:0.46


Consensus pattern (44 bp):   
TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
Done.