Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01648.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4649
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34


Found at i:2686 original size:27 final size:27

Alignment explanation


    Indices: 2656--2710  Score: 83
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       2646 TTGAGCTTAA

                  *                    
       2656 AAGTCTGATAGCTATTATTGATGGGTC
          1 AAGTCTCATAGCTATTATTGATGGGTC

                     *   *             
       2683 AAGTCTCATGGCTGTTATTGATGGGTC
          1 AAGTCTCATAGCTATTATTGATGGGTC

             
       2710 A
          1 A

       2711 CACTTTTCAA


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  27   25  1.00

ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36


Consensus pattern (27 bp):   
AAGTCTCATAGCTATTATTGATGGGTC
Done.