Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01660.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 767

Length: 1279
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29


Found at i:1261 original size:21 final size:22

Alignment explanation


    Indices: 1222--1262  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1212 CCTACCATGG

                                  
       1222 CTTGTATTTTAGTTGAATGATT
          1 CTTGTATTTTAGTTGAATGATT

                 *        *     
       1244 CTTGTTTTTTA-TTTAATGA
          1 CTTGTATTTTAGTTGAATGA

       1263 AGGAACCGAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    7  0.41
  22   10  0.59

ACGTcount: A:0.22, C:0.05, G:0.15, T:0.59


Consensus pattern (22 bp):   
CTTGTATTTTAGTTGAATGATT
Done.