Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01660.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29


Found at i:1161 original size:21 final size:22

Alignment explanation


    Indices: 1122--1162  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1112 CCTACCATGG

                                  
       1122 CTTGTATTTTAGTTGAATGATT
          1 CTTGTATTTTAGTTGAATGATT

                 *        *     
       1144 CTTGTTTTTTA-TTTAATGA
          1 CTTGTATTTTAGTTGAATGA

       1163 AGGAACCGAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    7  0.41
  22   10  0.59

ACGTcount: A:0.22, C:0.05, G:0.15, T:0.59


Consensus pattern (22 bp):   
CTTGTATTTTAGTTGAATGATT
Done.