Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00227.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3440
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:415 original size:58 final size:59

Alignment explanation


    Indices: 313--424  Score: 181
    Period size: 58  Copynumber: 1.9  Consensus size: 59

        303 TTCCCAGCTA

                               **    *                     *           
        313 GAATTTGCTGAAAATCATTTTTGTTTTTGGTTGTTCGTTTGAGCATTTGAGCTTTGCTC
          1 GAATTTGCTGAAAATCATTGCTGTTATTGGTTGTTCGTTTGAGCATTCGAGCTTTGCTC

                                                                  
        372 GAATTTGCTGAAAATCATTGCT-TTATTGGTTGTTCGTTTGAGCATTCGAGCTT
          1 GAATTTGCTGAAAATCATTGCTGTTATTGGTTGTTCGTTTGAGCATTCGAGCTT

        425 GGGTTTTTAT


Statistics
Matches: 49,  Mismatches: 4, Indels: 1
        0.91            0.07        0.02

Matches are distributed among these distances:
  58   29  0.59
  59   20  0.41

ACGTcount: A:0.19, C:0.12, G:0.22, T:0.46


Consensus pattern (59 bp):   
GAATTTGCTGAAAATCATTGCTGTTATTGGTTGTTCGTTTGAGCATTCGAGCTTTGCTC
Done.