Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01664.F24

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2440
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31


Found at i:111 original size:15 final size:15

Alignment explanation


    Indices: 93--141  Score: 62
    Period size: 15  Copynumber: 3.3  Consensus size: 15

         83 CAAGATTAAT

                       *   
         93 ATGTGCAACATCAAC
          1 ATGTGCAACATGAAC

                *       * *
        108 ATGTACAACATGGAT
          1 ATGTGCAACATGAAC

                           
        123 ATGTGCAACATGAAC
          1 ATGTGCAACATGAAC

                
        138 ATGT
          1 ATGT

        142 ACAGGATTGA


Statistics
Matches: 27,  Mismatches: 7, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  15   27  1.00

ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24


Consensus pattern (15 bp):   
ATGTGCAACATGAAC

Found at i:111 original size:30 final size:30

Alignment explanation


    Indices: 75--144  Score: 95
    Period size: 30  Copynumber: 2.3  Consensus size: 30

         65 AATGAAGAGT

                   *   *  *               
         75 AACATGTCCAAGATTAATATGTGCAACATC
          1 AACATGTACAACATGAATATGTGCAACATC

                           *             *
        105 AACATGTACAACATGGATATGTGCAACATG
          1 AACATGTACAACATGAATATGTGCAACATC

                      
        135 AACATGTACA
          1 AACATGTACA

        145 GGATTGACAC


Statistics
Matches: 35,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  30   35  1.00

ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24


Consensus pattern (30 bp):   
AACATGTACAACATGAATATGTGCAACATC
Done.