Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01665.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3060
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29


Found at i:49 original size:2 final size:2

Alignment explanation


    Indices: 42--87  Score: 83
    Period size: 2  Copynumber: 23.0  Consensus size: 2

         32 TCTCACATAT

                                                                         *
         42 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                 
         84 TC TC
          1 TC TC

         88 AACCTGAAAT


Statistics
Matches: 42,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   42  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Found at i:2879 original size:2 final size:2

Alignment explanation


    Indices: 2872--2914  Score: 59
    Period size: 2  Copynumber: 21.5  Consensus size: 2

       2862 ACTTAGTGAC

                           *                 *        *                   
       2872 AG AG AG AG AG GG AG AG AG AG AG CG AG AG CG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

             
       2914 A
          1 A

       2915 AGAAAGATGA


Statistics
Matches: 35,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.44, C:0.05, G:0.51, T:0.00


Consensus pattern (2 bp):   
AG

Done.