Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01679.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2221
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:1763 original size:18 final size:18

Alignment explanation


    Indices: 1727--1762  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1717 AGTTTTTTTT

                        *     
       1727 TTTTTTATATATTTAAAA
          1 TTTTTTATATATATAAAA

                              
       1745 TTTTTTATATATCATAAA
          1 TTTTTTATATAT-ATAAA

       1763 TCAATAAATA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18   12  0.75
  19    4  0.25

ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58


Consensus pattern (18 bp):   
TTTTTTATATATATAAAA
Done.