Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01697.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 331

Length: 553
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31


Found at i:475 original size:20 final size:20

Alignment explanation


    Indices: 450--489  Score: 71
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        440 CATTAAAAGG

                    *           
        450 TCAGTGCTTGTGCTTCCATC
          1 TCAGTGCTAGTGCTTCCATC

                                
        470 TCAGTGCTAGTGCTTCCATC
          1 TCAGTGCTAGTGCTTCCATC

        490 ATTCACTTTC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.12, C:0.30, G:0.20, T:0.38


Consensus pattern (20 bp):   
TCAGTGCTAGTGCTTCCATC
Done.