Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01705.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 701

Length: 1169
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37


Found at i:18 original size:2 final size:2

Alignment explanation


    Indices: 12--57  Score: 85
    Period size: 2  Copynumber: 23.5  Consensus size: 2

          2 CCATTCTAAA

                                                                          
         12 CT CT CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

                   
         53 CT CT C
          1 CT CT C

         58 CATTTCATAT


Statistics
Matches: 43,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   42  0.98

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
CT

Found at i:1119 original size:12 final size:12

Alignment explanation


    Indices: 1104--1130  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1094 TTTTTGTTTT

                        
       1104 TTGTTTTTAGAG
          1 TTGTTTTTAGAG

                        
       1116 TTGTTTTTAGAG
          1 TTGTTTTTAGAG

               
       1128 TTG
          1 TTG

       1131 AACAATCATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.15, C:0.00, G:0.26, T:0.59


Consensus pattern (12 bp):   
TTGTTTTTAGAG
Done.