Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01734.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2077
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32


Found at i:269 original size:24 final size:24

Alignment explanation


    Indices: 241--290  Score: 82
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        231 GATTAAAGTT

                                *   
        241 TCAACGTCTTGTTTCTTCATTCTG
          1 TCAACGTCTTGTTTCTTCATCCTG

                 *                  
        265 TCAACTTCTTGTTTCTTCATCCTG
          1 TCAACGTCTTGTTTCTTCATCCTG

              
        289 TC
          1 TC

        291 TATTGCTTAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.12, C:0.28, G:0.10, T:0.50


Consensus pattern (24 bp):   
TCAACGTCTTGTTTCTTCATCCTG

Found at i:303 original size:24 final size:24

Alignment explanation


    Indices: 241--303  Score: 65
    Period size: 24  Copynumber: 2.6  Consensus size: 24

        231 GATTAAAGTT

                 *    *         *   
        241 TCAACGTCTTGTTTCTTCATTCTG
          1 TCAACTTCTTATTTCTTCATCCTG

                      *             
        265 TCAACTTCTTGTTTCTTCATCCTG
          1 TCAACTTCTTATTTCTTCATCCTG

              *             
        289 TCTA-TTGCTTATTTC
          1 TCAACTT-CTTATTTC

        304 ATCACATCCA


Statistics
Matches: 34,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  23    2  0.06
  24   32  0.94

ACGTcount: A:0.13, C:0.25, G:0.10, T:0.52


Consensus pattern (24 bp):   
TCAACTTCTTATTTCTTCATCCTG

Found at i:1812 original size:20 final size:21

Alignment explanation


    Indices: 1787--1827  Score: 57
    Period size: 22  Copynumber: 2.0  Consensus size: 21

       1777 TAAATTTTTG

                         *       
       1787 AATTTTA-ATTTTTTAAATAA
          1 AATTTTAGATTTTATAAATAA

                                 
       1807 AATTTTAGGATTTTATAAATA
          1 AATTTTA-GATTTTATAAATA

       1828 TAATATAGTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    7  0.39
  22   11  0.61

ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51


Consensus pattern (21 bp):   
AATTTTAGATTTTATAAATAA
Done.