Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01743.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3940
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36


Found at i:1576 original size:2 final size:2

Alignment explanation


    Indices: 1569--1600  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       1559 TGTTGCTTTT

                                                           
       1569 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG

       1601 ATAGATAATG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50


Consensus pattern (2 bp):   
TG

Found at i:3502 original size:42 final size:42

Alignment explanation


    Indices: 3443--3527  Score: 125
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       3433 AATATATATG

                        *     *       *               
       3443 GTCTTTAGTGGCGTTTTTGGGGAAAGTGTCGATAAAGATCAT
          1 GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGATAAAGATCAT

                                           *     *    
       3485 GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGCTAAAGGTCAT
          1 GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGATAAAGATCAT

             
       3527 G
          1 G

       3528 ACATTTTGTA


Statistics
Matches: 38,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  42   38  1.00

ACGTcount: A:0.24, C:0.12, G:0.31, T:0.34


Consensus pattern (42 bp):   
GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGATAAAGATCAT
Done.