Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01744.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2172
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33


Found at i:1734 original size:42 final size:42

Alignment explanation


    Indices: 1675--1759  Score: 125
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1665 AATATATATG

                        *     *       *               
       1675 GTCTTTAGTGGCGTTTTTGGGGAAAGTGTCGATAAAGATCAT
          1 GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGATAAAGATCAT

                                           *     *    
       1717 GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGCTAAAGGTCAT
          1 GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGATAAAGATCAT

             
       1759 G
          1 G

       1760 ACATTTTGTA


Statistics
Matches: 38,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  42   38  1.00

ACGTcount: A:0.24, C:0.12, G:0.31, T:0.34


Consensus pattern (42 bp):   
GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGATAAAGATCAT
Done.