Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga08g01744.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2161
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:1723 original size:42 final size:42

Alignment explanation


    Indices: 1664--1748  Score: 125
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1654 AATATATATG

                        *     *       *               
       1664 GTCTTTAGTGGCGTTTTTGGGGAAAGTGTCGATAAAGATCAT
          1 GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGATAAAGATCAT

                                           *     *    
       1706 GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGCTAAAGGTCAT
          1 GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGATAAAGATCAT

             
       1748 G
          1 G

       1749 ACATTTTGTA


Statistics
Matches: 38,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  42   38  1.00

ACGTcount: A:0.24, C:0.12, G:0.31, T:0.34


Consensus pattern (42 bp):   
GTCTTTAGTGGCATTTTTAGGGAAAGCGTCGATAAAGATCAT
Done.