Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01945.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 940

Length: 1568
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31


Found at i:84 original size:19 final size:22

Alignment explanation


    Indices: 42--81  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

         32 CATGTTTGAC

                     *            
         42 TGTTGTTATTTACTGCATGCCA
          1 TGTTGTTATATACTGCATGCCA

                                
         64 TGTTGTTATAT-CTG-ATGC
          1 TGTTGTTATATACTGCATGC

         82 ATGGGATTGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    4  0.24
  21    3  0.18
  22   10  0.59

ACGTcount: A:0.17, C:0.15, G:0.20, T:0.47


Consensus pattern (22 bp):   
TGTTGTTATATACTGCATGCCA

Found at i:416 original size:33 final size:34

Alignment explanation


    Indices: 339--419  Score: 85
    Period size: 32  Copynumber: 2.4  Consensus size: 34

        329 TATGGGCCAT

                                            **
        339 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
          1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTCC

             *   *                **           
        373 ATTGTAATCTGAA-AA-GGGCTCTGGCCCAGTACC
          1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-CC

                          
        406 ACTGTTATCTGAAT
          1 ACTGTTATCTGAAT

        420 TGGCTTAGGC


Statistics
Matches: 37,  Mismatches: 8, Indels: 4
        0.76            0.16        0.08

Matches are distributed among these distances:
  32   13  0.35
  33   13  0.35
  34   11  0.30

ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30


Consensus pattern (34 bp):   
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTCC
Done.